Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum

Purushotham, Neeraj and Jones, Ashley and Poudel, Barsha and Nasim, Jamila and Adorada, Dante and Sparks, Adam ORCID: https://orcid.org/0000-0002-0061-8359 and Schwessinger, Benjamin and Vaghefi, Niloofar (2020) Draft genome resource for Macrophomina phaseolina associated with charcoal rot in sorghum. Molecular Plant-Microbe Interactions, 33 (5):MPMI-12-19-0356-A. pp. 724-726. ISSN 0894-0282


Abstract

Macrophomina phaseolina is a soil-borne phytopathogenic fungus that causes charcoal rot in several plant species, including sorghum. We constructed a draft genome of M. phaseolina isolate BRIP 70780a from sorghum, using long-read native DNA from MinION sequencing, which was error-corrected using short-read Illumina MiSeq reads. The draft genome, consisting of 22 contigs with an N50 of 4,257,441 bp, 99.3% complete benchmarking universal single-copy orthologs, and 14,471 genes, is a valuable resource to aid future studies in population genomics and molecular diagnostic marker development for rapid detection of the pathogen.


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Item Type: Article (Commonwealth Reporting Category C)
Refereed: Yes
Item Status: Live Archive
Additional Information: c. 2020 American Phytopathological Society. Permanent restricted access to Published version in accordance with the copyright policy of the publisher.
Faculty/School / Institute/Centre: Current - Institute for Life Sciences and the Environment - Centre for Crop Health (24 Mar 2014 -)
Faculty/School / Institute/Centre: Current - Research and Innovation Division (12 Jul 2012 -)
Date Deposited: 25 Jun 2020 00:25
Last Modified: 20 Jul 2020 03:44
Uncontrolled Keywords: Macrophomina phaseolina, sorghum, charcoal rot, MinION, Oxford nanopore
Fields of Research : 06 Biological Sciences > 0604 Genetics > 060408 Genomics
06 Biological Sciences > 0607 Plant Biology > 060704 Plant Pathology
07 Agricultural and Veterinary Sciences > 0703 Crop and Pasture Production > 070308 Crop and Pasture Protection (Pests, Diseases and Weeds)
Socio-Economic Objective: D Environment > 96 Environment > 9604 Control of Pests, Diseases and Exotic Species > 960413 Control of Plant Pests, Diseases and Exotic Species in Farmland, Arable Cropland and Permanent Cropland Environments
Identification Number or DOI: 10.1094/MPMI-12-19-0356-A
URI: http://eprints.usq.edu.au/id/eprint/38633

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